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GEO accession:
Series GSE252655
Query DataSets for GSE252655
Status
Public on May 17, 2024
Title
Deubiquitinating enzyme mutagenesis screens identify a USP43 driven HIF-1 transcriptional response
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Jan 05, 2024
Last update date
May 18, 2024
Contact name
Niek Wit
E-mail(s)
nw416@cam.ac.uk
Organization name
University of Cambridge
Department
Department of Medicine
Lab
Professor James Nathan
Street address
Puddicombe Way
City
Cambridge
State/province
Not US or Canada
ZIP/Postal code
CB2 0AW
Country
United Kingdom
Platforms (2)
GPL22790
Illumina MiniSeq (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (22)
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GSM8004837
HIF response suppressor screen FACS day8 GFP high 21% oxygen
GSM8004838
HIF response suppressor screen no FACS day8 21% oxygen
GSM8004839
HIF response activator screen FACS day8 GFP low 1% oxygen
GSM8004840
HIF response activator screen no FACS day8
GSM8004861
Control hypoxia biol rep 1
GSM8004862
Control hypoxia biol rep 2
GSM8004863
Control hypoxia biol rep 3
GSM8004864
Control normoxia biol rep 1
GSM8004865
Control normoxia biol rep 2
GSM8004866
Control normoxia biol rep 3
GSM8004867
HIF1B KO hypoxia biol rep 1
GSM8004868
HIF1B KO hypoxia biol rep 2
GSM8004869
HIF1B KO hypoxia biol rep 3
GSM8004870
HIF1B KO normoxia biol rep 1
GSM8004871
HIF1B KO normoxia biol rep 2
GSM8004872
HIF1B KO normoxia biol rep 3
GSM8004873
USP43 KO hypoxia biol rep 1
GSM8004874
USP43 KO hypoxia biol rep 2
GSM8004875
USP43 KO hypoxia biol rep 3
GSM8004876
USP43 KO normoxia biol rep 1
GSM8004877
USP43 KO normoxia biol rep 2
GSM8004878
USP43 KO normoxia biol rep 3
This SuperSeries is composed of the following SubSeries:
GSE252651
Deubiquitinating enzyme mutagenesis screens identify a USP43 driven HIF-1 transcriptional response [CRISPR]
GSE252654
Deubiquitinating enzyme mutagenesis screens identify a USP43 driven HIF-1 transcriptional response [RNA-seq]
Relations
BioProject
PRJNA1061572
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE252655_RAW.tar
53.9 Mb
(http)
(custom)
TAR (of SF, TXT)
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