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| Status |
Public on Nov 18, 2010 |
| Title |
embryo 0h reference tiling array |
| Project |
modENCODE
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| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
modENCODE_submission_3172
This submission comes from a modENCODE project of Robert Waterston. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: Our experiments are designed to detect all C. elegans transcripts by hybridizing RNA to commerically available genome tiling arrays. To maximize the chances of detecting rare transcripts with limited expression in specific cells, we are extracting RNA from selected embryonic cells isolated by FACS and from postembryonic cells by use of the mRNA tagging method.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| Overall design |
EXPERIMENT TYPE: Transcript tiling array analysis. BIOLOGICAL SOURCE: Strain: N2; Tissue: reference (early embryo); Developmental Stage: Mixed stage of embryos 20dC; Genotype: wild type; Sex: Hermaphrodite; NUMBER OF REPLICATES: 3; EXPERIMENTAL FACTORS: Strain N2; temperature 20; Developmental Stage Mixed stage of embryos 20dC; Tissue reference (early embryo)
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| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Waterston B, Miller D, Gerstein M, Wilson M, Argiwal A, Reinke V |
| Citation(s) |
21177967 |
| BioProject |
PRJNA168961 |
| |
| Submission date |
Nov 15, 2010 |
| Last update date |
Apr 30, 2013 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL5634 |
[Ce25b_MR] Affymetrix C. elegans Tiling 1.0R Array |
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| Samples (3) |
| GSM624418 |
embryo_0hr_reference_tiling_array extraction1_array1 |
| GSM624419 |
embryo_0hr_reference_tiling_array extraction2_array1 |
| GSM624420 |
embryo_0hr_reference_tiling_array extraction3_array1 |
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