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| Status |
Public on Nov 18, 2010 |
| Title |
Kc H2Av Knockdown RNA Expression Tiling Array |
| Project |
modENCODE
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| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by genome tiling array
|
| Summary |
modENCODE_submission_2761
This submission comes from a modENCODE project of Steven Henikoff. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: poly A+ RNA was isolated and used to synthesize single-stranded cDNA probes. Labeled cDNA and labeled genomic DNA were hybridized to NimbleGen microarrays (2-color hybridizations). These experiments are used as controls for nucleosome salt fractionations.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| Overall design |
EXPERIMENT TYPE: tiling array analysis. BIOLOGICAL SOURCE: Cell Line: Kc167; Tissue: embryo-derived cell-line; Developmental Stage: late embryonic stage; Genotype: se/e; Sex: Female; NUMBER OF REPLICATES: 2; EXPERIMENTAL FACTORS: dsRNA (synthetic_RNA) CG5499_RNAi; Cell Line Kc167
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| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Henikoff S, Henikoff J, Ahmad K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA168994 |
| |
| Submission date |
Nov 15, 2010 |
| Last update date |
May 29, 2013 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
|
| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
| |
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| Platforms (1) |
| GPL6888 |
Henikoff_Dmel_r52_ChIP tiling design |
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| Samples (2) |
| GSM624891 |
AC_56C0C1_353355-5 extraction2_array1 |
| GSM624892 |
P_57C0C1_383370-2 extraction4_array1 |
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