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Series GSE25448 Query DataSets for GSE25448
Status Public on Oct 10, 2012
Title Comparison of the response to bile of Lactobacillus casei BL23 and its derivative strain TC01
Platform organism Lacticaseibacillus paracasei ATCC 334
Sample organism Lacticaseibacillus casei
Experiment type Expression profiling by array
Summary The response to bile of Lactobacillus casei BL23 and its derivative strain TC01 was investigated. TC01 strain carries a complete deletion of gene LCABL_02080 which encodes a two component signal transduction response regulator.
Overall design Lactobacillus casei BL23 and TC01 strains were grown in MRS medium at 37C without shaking until O.D. 595 nm. reached 0.5. The cultures were then two fold diluted with prewarmed MRS medium (control) or MRS supplemented with 0.2% bovine bile (treatment) and incubation continued for 45 min. Cells were then harvested and total RNA purified.
Contributor(s) Zúñiga M, Alcántara C
Citation(s) 22322960
Submission date Nov 17, 2010
Last update date Jan 09, 2013
Contact name Manuel Zúñiga
Phone 34 963900022
Fax 34 963636301
Organization name Instituto de Agroquímica y Tecnología de Alimentos
Department Biotecnología
Lab Bacterias lácticas y Probióticos
Street address Avda. Profesor Agustín Escardino 7
City Paterna
State/province Valencia
ZIP/Postal code 46980
Country Spain
Platforms (1)
GPL11074 IATA Lactobacillus casei ATCC 334 2.7k array_v1
Samples (12)
GSM610868 BL23 bile_1
GSM618313 BL23 bile_2
GSM618314 BL23 bile_3
BioProject PRJNA133809

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE25448_BL23MRSnormalized.txt.gz 15.5 Kb (ftp)(http) TXT
GSE25448_BL23bilenormalized.txt.gz 15.4 Kb (ftp)(http) TXT
GSE25448_BL23bilevsmrs.txt.gz 10.0 Kb (ftp)(http) TXT
GSE25448_TC01MRSnormalized.txt.gz 15.8 Kb (ftp)(http) TXT
GSE25448_TC01bilenormalized.txt.gz 15.0 Kb (ftp)(http) TXT
GSE25448_TC01bilevsmrs.txt.gz 10.2 Kb (ftp)(http) TXT
GSE25448_bileTC01vsbl23.txt.gz 10.0 Kb (ftp)(http) TXT
GSE25448_mrsTC01vsbl23.txt.gz 9.6 Kb (ftp)(http) TXT
Processed data are available on Series record

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