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Status |
Public on Feb 07, 2024 |
Title |
Glomerular voom-transformed RNAseq counts from the Neptune Cohort and healthy living donors [re-analysis of GSE197307] |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Glomerular Transcriptome in the Nephrotic Syndrome study network cohort
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Overall design |
Please note that GSE197307 samples were re-analyzed as described below. Glomerular RNAseq profiles; Raw data (fastq) files are available upon approved ancillary study request from the NEPTUNE consortium (please see https://www.neptune-study.org/ancillary-studies; email contact: NEPTUNE-STUDY@umich.edu *data processing step: fastqScreen 0.11.4 cutadapt 1.14 -m 50 -A CTGTCTCTTATA -a CTGTCTCTTATA STAR 2.5.2.a --bamRemoveDuplicatesType UniqueIdentical --twopassMode Basic --outFilterIntronMotifs RemoveNoncanonical --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif htseq-count --stranded=no --order=pos --mode=union genome build/assembly: GRCh 38.86 processed data files format and content: voom transformed data were batch corrected and trimmed to remove transcripts of no detectable abundance.
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Contributor(s) |
Felix E, Sean E, Laura M, Rajasree M, Brad G, Matthias K |
Citation(s) |
36442540 |
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Submission date |
Feb 02, 2024 |
Last update date |
Nov 04, 2024 |
Contact name |
Sean Eddy |
E-mail(s) |
seaneddy@umich.edu
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Organization name |
University of Michigan
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Street address |
1150 West Medical Center Drive
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City |
Ann Arbor |
State/province |
MI |
ZIP/Postal code |
48109 |
Country |
USA |
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