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Series GSE255625 Query DataSets for GSE255625
Status Public on May 25, 2024
Title Effect of specific G-quadruplex stabilization on gene expression and chromatin accessibility at gene promoters in Hela cells.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary To investigate specific G-quadruplex stabilization in the regulation of gene expression and chromatin accessibility, we established HeLa cell lines in which each target g-quadruplexes has been stabilized.
 
Overall design Comparative gene expression and chromatin accessibility profiling analysis of RNA-seq and ATAC-seq data for HeLa cells in which each target g-quadruplexes has been stabilized.
 
Contributor(s) Qin G, Liu Z, Ren J, Qu X
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Submission date Feb 12, 2024
Last update date May 27, 2024
Contact name Gen Qin
E-mail(s) qmac6918297@outlook.com
Organization name Changchun Institute of Applied Chemistry, Chinese Academy of Sciences
Department Laboratory of Chemical Biology and State Key Laboratory of Rare Earth Resource Utilization
Street address renmin street 5625
City changchun
ZIP/Postal code 130022
Country China
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (16)
GSM8076226 Sample 1
GSM8076227 Sample 2
GSM8076228 Sample 3
Relations
BioProject PRJNA1075785

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE255625_RAW.tar 263.1 Mb (http)(custom) TAR (of BIGWIG)
GSE255625_dCas9-SunTag_+_sgR-lncRNAs_+_Bio-PDC_VS_dCas9-SunTag_+_sgR-Ctrl_+_Bio-PDC.All.fpkm.anno_1_.xls.gz 474.5 Kb (ftp)(http) XLS
GSE255625_dCas9-SunTag_+_sgR-lncRNAs_+_Bio-PDS_VS_dCas9-SunTag_+_sgR-Ctrl_+_Bio-PDS.All.fpkm.anno_1_.xls.gz 598.0 Kb (ftp)(http) XLS
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Raw data are available in SRA
Processed data provided as supplementary file

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