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Series GSE256852 Query DataSets for GSE256852
Status Public on Feb 27, 2024
Title TF ChIP-seq from whole organism (ENCSR133RTP)
Project modENCODE
Organism Caenorhabditis elegans
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq of transgenic worms expressing MADF-10-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR133RTP/
 
Citation(s) 22955616
BioProject PRJNA63463
Submission date Feb 24, 2024
Last update date Feb 27, 2024
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (2)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (2)
GSM8106675 TF ChIP-seq from whole organism (ENCLB517JHT)
GSM8106676 TF ChIP-seq from whole organism (ENCLB216KDQ)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE256852_ENCFF004CRB_optimal_IDR_thresholded_peaks_ce10.bed.gz 54.9 Kb (ftp)(http) BED
GSE256852_ENCFF056ODN_signal_of_unique_reads_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256852_ENCFF274DUL_peaks_and_background_as_input_for_IDR_ce10.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE256852_ENCFF274SYV_peaks_and_background_as_input_for_IDR_ce10.bed.gz 751.2 Kb (ftp)(http) BED
GSE256852_ENCFF363QUH_optimal_IDR_thresholded_peaks_ce11.bigBed 108.8 Kb (ftp)(http) BIGBED
GSE256852_ENCFF411SPA_peaks_and_background_as_input_for_IDR_ce11.bed.gz 751.2 Kb (ftp)(http) BED
GSE256852_ENCFF425FCA_optimal_IDR_thresholded_peaks_ce10.bigBed 132.8 Kb (ftp)(http) BIGBED
GSE256852_ENCFF551AQN_peaks_and_background_as_input_for_IDR_ce11.bigBed 1.2 Mb (ftp)(http) BIGBED
GSE256852_ENCFF592CXC_optimal_IDR_thresholded_peaks_ce11.bed.gz 36.4 Kb (ftp)(http) BED
GSE256852_ENCFF624STC_read-depth_normalized_signal_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256852_ENCFF627LXA_control_normalized_signal_ce11.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE256852_ENCFF758YRV_signal_of_unique_reads_ce10.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256852_ENCFF849QJE_read-depth_normalized_signal_ce11.bigWig 9.6 Mb (ftp)(http) BIGWIG
GSE256852_ENCFF887EAR_control_normalized_signal_ce10.bigWig 9.8 Mb (ftp)(http) BIGWIG
GSE256852_RAW.tar 123.3 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA

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