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Series GSE259204

Query DataSets for GSE259204

Status

Public on Feb 27, 2024

Title

TF ChIP-seq from whole organism (ENCSR533AOQ)

Project

modENCODE

Organism

Caenorhabditis elegans

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ChIP-seq on transgenic worms expressing cebp-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR533AOQ/

Citation(s)

22955616

BioProject

PRJNA63463

Submission date

Feb 26, 2024

Last update date

Sep 02, 2024

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL26672

Illumina NovaSeq 6000 (Caenorhabditis elegans)

Samples (2)

GSM8111287	TF ChIP-seq from whole organism (ENCLB117BQC)
GSM8111288	TF ChIP-seq from whole organism (ENCLB127KYW)

Relations

Reanalyzed by

GSE276166

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE259204_ENCFF045SWG_conservative_IDR_thresholded_peaks_ce11.bed.gz	19.7 Kb	(ftp)(http)	BED
GSE259204_ENCFF183IYU_IDR_thresholded_peaks_ce11.bed.gz	26.1 Kb	(ftp)(http)	BED
GSE259204_ENCFF465JEK_signal_p-value_ce11.bigWig	239.8 Mb	(ftp)(http)	BIGWIG
GSE259204_ENCFF878CTC_fold_change_over_control_ce11.bigWig	271.2 Mb	(ftp)(http)	BIGWIG
GSE259204_ENCFF880EOV_IDR_ranked_peaks_ce11.bed.gz	5.0 Mb	(ftp)(http)	BED
GSE259204_ENCFF898CFC_IDR_thresholded_peaks_ce11.bigBed	83.3 Kb	(ftp)(http)	BIGBED
GSE259204_ENCFF921KUT_IDR_ranked_peaks_ce11.bed.gz	4.6 Mb	(ftp)(http)	BED
GSE259204_ENCFF922XYL_conservative_IDR_thresholded_peaks_ce11.bigBed	74.9 Kb	(ftp)(http)	BIGBED
GSE259204_RAW.tar	792.5 Mb	(http)(custom)	TAR (of BED, BIGBED, BIGWIG, TXT)
Raw data are available in SRA