|
| Status |
Public on Mar 26, 2024 |
| Title |
CTCF ChIP-Seq in a panel of 18 cell lines related to ovarian cancer |
| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
CTCF ChIP-Seq was generated in a panel of 18 ovarian cancer cell lines to identify active regulatory elements in the genome.
|
| |
|
| Overall design |
ChIP-Seq performed in 18 cell lines. Biological replicates were run for all lines other than ES2
|
| |
|
| Contributor(s) |
Jones MR, Gayther SA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Mar 19, 2024 |
| Last update date |
Mar 26, 2024 |
| Contact name |
Michelle Renee Jones |
| E-mail(s) |
jonesmrx@cshs.org
|
| Organization name |
Cedars-Sinai Medical Center
|
| Department |
Biomedical Sciences
|
| Lab |
Center for Bioinformatics and Functional Genomics
|
| Street address |
8720 Alden Dv
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90048 |
| Country |
USA |
| |
|
| Platforms (1) |
|
| Samples (50)
|
|
| Relations |
| BioProject |
PRJNA1089603 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE261931_CaOV3-A-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup_pooled.tagAlign_x_CaOV3-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
2.6 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_EEC16_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
95.8 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_EFO27-A-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup_pooled.tagAlign_x_EFO27-25-Input_14Dec2017_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
2.2 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_ES2_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_FT246-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign_x_FT246-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
1.9 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_FT282_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_FT33-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign_x_FT33-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
1.8 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_GTFR230_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_HeyA8_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.3 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_IOSE11-A-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup_pooled.tagAlign_x_IOSE11-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
1.6 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_IOSE4-A-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup_pooled.tagAlign_x_IOSE4-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
1.5 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_JHOC5_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
751.0 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_Kura_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
804.0 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_MCAS_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.3 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_OAW42_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
1.5 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_RMGII_2D_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
282.1 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_UWB1.289-CTCF_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign_x_UWB1.289-25-Input_5Jan2018_GRCh38_CGC_BWAmem.nodup.tagAlign.naive_overlap.filt.regionPeak.narrowpeak.gz |
1.1 Mb |
(ftp)(http) |
NARROWPEAK |
| GSE261931_VOA1056_CTCF_hg38.rep1-rep2.idr0.05.bfilt.regionPeak.narrowpeak.gz |
963.9 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
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