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Series GSE262486 Query DataSets for GSE262486
Status Public on Apr 02, 2024
Title Genome-wide CPD repair maps of Caenorhabditis elegans
Organism Caenorhabditis elegans
Experiment type Other
Summary We have adapted the eXcision Repair-sequencing (XR-seq) method to generate single-nucleotide resolution dynamic repair maps of UV-induced cyclobutane pyrimidine dimers (CPD) photoproducts in the Caenorhabditis elegans (C. elegans) genome.
Overall design We employed XR-seq to evaluate genome-wide excision repair dynamics in WT, csb-1, and xpc-1 C. elegans following UV exposure.
Contributor(s) Kose C, Lindsey-Boltz L, Sancar A, Jiang Y
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Submission date Mar 26, 2024
Last update date Apr 03, 2024
Contact name Yuchao Jiang
Organization name Texas A&M University
Street address 3143 TAMU
City College Station
State/province TX
ZIP/Postal code 77843
Country USA
Platforms (1)
GPL32326 NextSeq 2000 (Caenorhabditis elegans)
Samples (8)
GSM8170419 XR- seq csb-1 mutant C. elegans CPD 1h rep 1
GSM8170420 XR- seq csb-1 mutant C. elegans CPD 1h rep 2
GSM8170421 XR-seq WT C. elegans CPD 1h rep 1
BioProject PRJNA1091964

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Supplementary file Size Download File type/resource
GSE262486_RAW.tar 390.9 Mb (http)(custom) TAR (of BED)
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Raw data are available in SRA

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