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Series GSE26674 Query DataSets for GSE26674
Status Public on Jul 19, 2011
Title SNP array analysis on Maffucci tumours
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary Here we have used four enchondromas and two chondrosarcomas of Maffucci patients. We also had one normal sample available for paired analysis in one of the chondrosarcoma II. We did not find any LOH or coomon copy number variation in all Maffucci enchondromas while chondrosarcomas are genetically unstable.
Overall design Affymetrix SNP 6.0 array was performed using 4 EC and 2CS of Maffucci patients. Illumina expression v3 array was possible to perform using only 1 EC and 2 CS due to rarity of the disease. For SNP array, we used 29 control samples submitted previously (GSE22965) to creat baseline.
Contributor(s) Pansuriya TC, Oosting J, Bovee J
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Submission date Jan 18, 2011
Last update date Nov 27, 2018
Contact name Twinkal Chandubhai Pansuriya
Phone 0031715266528
Organization name LUMC
Department Pathology
Street address Albinusdreef 2
City Leiden
State/province Zuid-Holland
ZIP/Postal code 2333ZA
Country Netherlands
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (7)
GSM567060 L2195N
GSM656407 Maffucci chondrosarcoma
GSM656408 Maffucci enchondroma
This SubSeries is part of SuperSeries:
GSE26675 Maffucci tumours
BioProject PRJNA142193

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE26674_RAW.tar 549.2 Mb (http)(custom) TAR (of CEL, CHP, CNCHP, GQC)
Processed data included within Sample table
Processed data provided as supplementary file

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