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| Status |
Public on May 19, 2005 |
| Title |
ENCODE Transcript Mapping for Total RNA from Human NB4 Cells untreated, treated with RA, and treated with TPA |
| Project |
Pilot ENCODE
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| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
Transcript Mapping on Affymetrix ENCODE arrays for Total RNA from 4 different samples (2 or 3 technical replicates of each). All of the four same NB4 samples have also been treated with Retanoic Acid (RA) (2 or 3 technical replicates of each). Three of the four same NB4 samples have also been treated with TPA (2 or 3 technical replicates of each). RA treated NB4 cells can be partially differentiated to Neutrophils and TPA treated NB4 cells can be differentiated to Monocytes.
Keywords = Transcript Mapping, Human, Affymetrix, Genome Tiling Arrays
Keywords: parallel sample
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| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Rozowsky JS, Lian Z, Kapranov P, Emanuelsson O, Nagalakshmi U, Urban AE, Cheung J, Weissman S, Gerstein M, Gingeras T, Snyder MP |
| Citation(s) |
17119069, 17571346 |
| BioProject |
PRJNA63419 |
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| Submission date |
May 18, 2005 |
| Last update date |
Sep 14, 2012 |
| Contact name |
Joel Rozowsky |
| E-mail(s) |
rozowsky@csb.yale.edu
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| Phone |
203-432-5405
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| Organization name |
Yale University
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| Department |
Molecular Biophysics & Biochemistry
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| Lab |
Gerstein Lab
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| Street address |
266 Whitney Ave, Bass 437
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| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06520 |
| Country |
USA |
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| Platforms (1) |
| GPL1789 |
Affymetrix ENCODE Tiling Array - ANTISENSE - NCBIv34 |
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| Samples (11)
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| GSM51723 |
Total RNA from untreated Human NB4 Cells Bioligical Sample 1 |
| GSM51724 |
Total RNA from untreated Human NB4 Cells Bioligical Sample 2 |
| GSM51725 |
Total RNA from untreated Human NB4 Cells Bioligical Sample 3 |
| GSM51726 |
Total RNA from untreated Human NB4 Cells Bioligical Sample 4 |
| GSM51727 |
Total RNA from Human NB4 Cells treated with RA Bioligical Sample 1 |
| GSM51728 |
Total RNA from Human NB4 Cells treated with RA Bioligical Sample 2 |
| GSM51729 |
Total RNA from Human NB4 Cells treated with RA Bioligical Sample 3 |
| GSM51730 |
Total RNA from Human NB4 Cells treated with RA Bioligical Sample 4 |
| GSM51731 |
Total RNA from Human NB4 Cells treated with TPA Bioligical Sample 2 |
| GSM51732 |
Total RNA from Human NB4 Cells treated with TPA Bioligical Sample 3 |
| GSM51733 |
Total RNA from Human NB4 Cells treated with TPA Bioligical Sample 4 |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE2679_RAW.tar |
186.4 Mb |
(http)(custom) |
TAR (of CEL) |
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