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Series GSE270349 Query DataSets for GSE270349
Status Public on Jun 20, 2024
Title Transcriptomic data from a clinical cohort of men who have sex with men (MSM) and controls.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary These samples are part of large study to understand the rectal mucosal immune environment among MSM.
Overall design 140 rectal biopsies from MSM and contols subjects from various Race, Age and Infection status groups. 57 samples previously submitted in GSE211922 (see below table of reanalyzed samples).
Contributor(s) Smith SA, Murray PM, Amancha PK, Ackerley CG, Van Doren VE, Hu Y, Archer RA, Johnson HR, Bosinger SE, Amara RR, Kelley CF
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jun 20, 2024
Last update date Jun 21, 2024
Contact name Gregory K Tharp
Phone 404-727-7797
Organization name Yerkes National Primate Research Center
Department Developmental and Cognitive Neuroscience
Lab Genomics Core
Street address 954 Gatewood Dr
City Atlanta
State/province GA
ZIP/Postal code 30329-4208
Country USA
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (83)
GSM8340110 11_ARM-055
GSM8340111 12_ARM-036
GSM8340112 13_ARM-040
Reanalysis of GSM6505557
Reanalysis of GSM6505558
Reanalysis of GSM6505559
Reanalysis of GSM6505560
Reanalysis of GSM6505561
Reanalysis of GSM6505562
Reanalysis of GSM6505563
Reanalysis of GSM6505564
Reanalysis of GSM6505565
Reanalysis of GSM6505566
Reanalysis of GSM6505567
Reanalysis of GSM6505568
Reanalysis of GSM6505569
Reanalysis of GSM6505570
Reanalysis of GSM6505571
Reanalysis of GSM6505572
Reanalysis of GSM6505573
Reanalysis of GSM6505574
Reanalysis of GSM6505575
Reanalysis of GSM6505576
Reanalysis of GSM6505577
Reanalysis of GSM6505578
Reanalysis of GSM6505579
Reanalysis of GSM6505580
Reanalysis of GSM6505581
Reanalysis of GSM6505582
Reanalysis of GSM6505583
Reanalysis of GSM6505584
Reanalysis of GSM6505585
Reanalysis of GSM6505586
Reanalysis of GSM6505587
Reanalysis of GSM6505588
Reanalysis of GSM6505589
Reanalysis of GSM6505590
Reanalysis of GSM6505591
Reanalysis of GSM6505592
Reanalysis of GSM6505593
Reanalysis of GSM6505594
Reanalysis of GSM6505595
Reanalysis of GSM6505596
Reanalysis of GSM6505597
Reanalysis of GSM6505598
Reanalysis of GSM6505599
Reanalysis of GSM6505600
Reanalysis of GSM6505601
Reanalysis of GSM6505602
Reanalysis of GSM6505603
Reanalysis of GSM6505604
Reanalysis of GSM6505605
Reanalysis of GSM6505606
Reanalysis of GSM6505607
Reanalysis of GSM6505608
Reanalysis of GSM6505609
Reanalysis of GSM6505610
Reanalysis of GSM6505611
Reanalysis of GSM6505612
Reanalysis of GSM6505613
BioProject PRJNA1126240

Data table header descriptions
GEO Sample GEO Sample link
GEO Series GEO Series link
SRA Experiment SRA Run Selector link for SRA Experiment
BioSample SRA Run Selector link for BioSample
BioProject SRA Run Selector link for BioProject
Sample title Title of GEO Sample record

Data table
GEO Sample GEO Series SRA Experiment BioSample BioProject Sample title
GSM6505557 GSE211922 SRX17229397 SAMN30470398 PRJNA872820 1_ARM-003
GSM6505558 GSE211922 SRX17229396 SAMN30470397 PRJNA872820 2_ARM-005
GSM6505559 GSE211922 SRX17229395 SAMN30470396 PRJNA872820 3_ARM-012
GSM6505560 GSE211922 SRX17229394 SAMN30470395 PRJNA872820 4_ARM-017
GSM6505561 GSE211922 SRX17229405 SAMN30470394 PRJNA872820 5_ARM-018
GSM6505562 GSE211922 SRX17229404 SAMN30470393 PRJNA872820 6_ARM-021
GSM6505563 GSE211922 SRX17229403 SAMN30470392 PRJNA872820 7_ARM-022
GSM6505564 GSE211922 SRX17229402 SAMN30470391 PRJNA872820 8_ARM-028
GSM6505565 GSE211922 SRX17229401 SAMN30470390 PRJNA872820 9_ARM-023
GSM6505566 GSE211922 SRX17229400 SAMN30470389 PRJNA872820 10_ARM-052
GSM6505567 GSE211922 SRX17229399 SAMN30470388 PRJNA872820 14_ARM-015
GSM6505568 GSE211922 SRX17229398 SAMN30470387 PRJNA872820 15_STI-035
GSM6505569 GSE211922 SRX17229406 SAMN30470386 PRJNA872820 16_STI-006
GSM6505570 GSE211922 SRX17229407 SAMN30470385 PRJNA872820 17_STI-007
GSM6505571 GSE211922 SRX17229408 SAMN30470384 PRJNA872820 18_STI-012
GSM6505572 GSE211922 SRX17229415 SAMN30470383 PRJNA872820 19_STI-011
GSM6505573 GSE211922 SRX17229416 SAMN30470382 PRJNA872820 20_STI-017
GSM6505574 GSE211922 SRX17229409 SAMN30470381 PRJNA872820 21_ARM-006
GSM6505575 GSE211922 SRX17229410 SAMN30470380 PRJNA872820 22_ARM-007
GSM6505576 GSE211922 SRX17229411 SAMN30470379 PRJNA872820 23_ARM-019

Total number of rows: 57

Table truncated, full table size 3 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE270349_p20025_BothBatches_DESeq2_RawCount.csv.gz 6.1 Mb (ftp)(http) CSV
GSE270349_sample_descriptions.xlsx 28.9 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA

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