NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE2720 Query DataSets for GSE2720
Status Public on Jun 04, 2005
Title ENCODE transcript mapping for human placental poly(A)+ RNA and human NB4 cell line total RNA
Project Pilot ENCODE
Organism Homo sapiens
Experiment type Expression profiling by genome tiling array
Summary not available
Keywords: other
 
Overall design Transcript mapping on maskless array synthesizer (MAS) ENCODE arrays for 3 different biological replicates of placental poly(A)+ RNA (each with either 2 or 3 technical replicates): GSM52610, GSM52611, GSM52612, GSM52613, GSM52614, GSM52615, and GSM52616.

Keywords = placenta poly(A)+ RNA, ENCODE, tiling array, maskless photolithography, transcription mapping

Transcript mapping on maskless array synthesizer (MAS) ENCODE arrays for 3 different biological replicates of NB4 total RNA (each with 2 technical replicates): GSM52617, GSM52618, GSM52619, GSM52620, GSM52621, and GSM52622.

Keywords = NB4 cell line total RNA, ENCODE, tiling array, maskless photolithography, transcription mapping

Transcript mapping on maskless array synthesizer (MAS) ENCODE arrays for 3 different biological replicates of placental poly(A)+ RNA (each with either 2 or 4 technical replicates) using the protocol described in Bertone et al, Science 306 (2004): GSM52649, GSM52650, GSM52651, GSM52652, GSM52653, GSM52654, GSM52655, and GSM60239.

Keywords = placenta poly(A)+ RNA, ENCODE, tiling array, maskless photolithography, transcription mapping
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Emanuelsson O, Nagalakshmi U, Lian Z, Rozowsky JS, Urban AE, Weissman S, Snyder MP, Gerstein M
Citation(s) 17119069
BioProject PRJNA63419
Submission date May 28, 2005
Last update date Jul 26, 2013
Contact name Olof Emanuelsson
E-mail(s) olofe@sbc.su.se
Phone +1-203-432-6105
Organization name Yale University
Street address 260 Whitney Avenue
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platforms (1)
GPL2105 Human 36mer ENCODE region oligonucleotide tiling array (Yale design #1)
Samples (21)
GSM52610 Poly(A)+ human placenta tissue RNA pooled from several individuals; Sample B1T1
GSM52611 Poly(A)+ human placenta tissue RNA pooled from several individuals; Sample B1T2
GSM52612 Poly(A)+ human placenta tissue RNA pooled from several individuals; Sample B1T3

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap