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GEO accession:
Series GSE27394
Query DataSets for GSE27394
Status
Public on Mar 03, 2011
Title
Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43
Organism
Mus musculus
Experiment type
Genome binding/occupancy profiling by array
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
21358643
Submission date
Feb 17, 2011
Last update date
May 15, 2019
Contact name
Gene Yeo
E-mail(s)
geneyeo@ucsd.edu
Organization name
UCSD
Street address
2880 Torrey Pines Scenic Dr. Room 3805/Yeo Lab
City
La Jolla
State/province
CA
ZIP/Postal code
92037
Country
USA
Platforms (2)
GPL9250
Illumina Genome Analyzer II (Mus musculus)
GPL13185
[mjay] Custom Affymetrix Mouse Exon Junction Array
Samples (29)
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GSM672062
CLIPseq_Tdp43_high-Mnase
GSM672063
CLIPseq_Tdp43_low-Mnase
GSM672528
brain_RNAseq_control-oligo_rep1.1
GSM672529
brain_RNAseq_control-oligo_rep2.1
GSM672530
brain_RNAseq_control-oligo_rep3.1
GSM672531
brain_RNAseq_control-oligo_rep4.1
GSM672532
brain_RNAseq_control-oligo_rep4.2
GSM672533
brain_RNAseq_control-oligo_rep1.2
GSM672534
brain_RNAseq_control-oligo_rep2.2
GSM672535
brain_RNAseq_control-oligo_rep2.3
GSM672536
brain_RNAseq_control-oligo_rep3.2
GSM672537
brain_RNAseq_control-oligo_rep3.3
GSM672538
brain_RNAseq_control-oligo_rep4.3
GSM672539
brain_RNAseq_Tdp43-oligo_rep1.1
GSM672540
brain_RNAseq_Tdp43-oligo_rep1.2
GSM672541
brain_RNAseq_Tdp43-oligo_rep2.1
GSM672542
brain_RNAseq_Tdp43-oligo_rep2.2
GSM672543
brain_RNAseq_Tdp43-oligo_rep1.3
GSM672544
brain_RNAseq_Tdp43-oligo_rep2.3
GSM672545
brain_RNAseq_Tdp43-oligo_rep3.1
GSM672546
brain_RNAseq_Tdp43-oligo_rep4.1
GSM672547
brain_RNAseq_Tdp43-oligo_rep3.2
GSM672548
brain_RNAseq_Tdp43-oligo_rep4.2
GSM676974
polyA_RNA_control_oligo_rep1
GSM676975
polyA_RNA_control_oligo_rep2
GSM676976
polyA_RNA_control_oligo_rep3
GSM676977
polyA_RNA_Tdp43_oligo_rep1
GSM676978
polyA_RNA_Tdp43_oligo_rep2
GSM676979
polyA_RNA_Tdp43_oligo_rep3
This SuperSeries is composed of the following SubSeries:
GSE27201
Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (CLIP)
GSE27218
Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (RNA-seq)
GSE27371
Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43 (Affymetrix)
Relations
BioProject
PRJNA137005
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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Supplementary file
Size
Download
File type/resource
GSE27394_RAW.tar
9.3 Gb
(http)
(custom)
TAR (of BOWTIE, CEL)
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