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Series GSE277011 Query DataSets for GSE277011
Status Public on Oct 30, 2024
Title Endothelial-secreted Endocan protein acts as a PDGFR alpha ligand and regulates vascularity, radioresistance, and regional phenotype in glioblastoma [1]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary One of the hallmarks of glioblastoma (GBM) is extensive neovascularization. In addition to supplying blood and nutrients, vascular endothelial (VE) cells provide trophic support to GBM cells via paracrine signaling, the precise mechanisms of which are being unraveled. Here, using patient-derived GBM and VE cells as well as orthotopic GBM mouse models, we report that Endocan (ESM1), an endothelial-secreted proteoglycan, confers enhanced proliferative, migratory, and angiogenic properties to GBM cells and regulates their spatial identity. Mechanistically, Endocan exerts at least part of its functions via direct binding and activation of the PDGFRA receptor. Subsequent downstream signaling enhances chromatin accessibility of the Myc promoter and upregulates Myc expression inducing highly stable phenotypic changes in GBM cells. Furthermore, Endocan confers a radioprotection phenotype in GBM cells, both in vitro and in vivo. Inhibition of Endocan-PDGFRA signaling with ponatinib increases survival in the Esm1 wild-type but not in the Esm1 knock-out mouse GBM model. Our findings identify Endocan and its downstream signaling axis as a potential target to subdue the recurrence of GBM and further highlight the importance of vascular to tumor cell signaling for GBM biology.
 
Overall design There are three groups: Control only (n=4), 1079 cells treated with 10ng/ml Endodcan (n=4) or 10ng/ml of PDGFBB for 72 hours. We then performed RNAseq of these samples and performed gene expression analyses.
 
Contributor(s) Bastola S, Pavlyukov M, Gao F, Kawaguchi R, Kornbmum H
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Submission date Sep 12, 2024
Last update date Oct 30, 2024
Contact name Riki Kawaguchi
Organization name University of California, Los Angeles
Department Department of Psychiatry and Neurology Department of Psychiatry
Lab AMRF Functional Genomics Common Research Resource
Street address 760 Westwood Plaza, Room 37-420
City Los Angeles
State/province CA
ZIP/Postal code 90095-1759
Country USA
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM8511878 Control rep1
GSM8511879 Control rep2
GSM8511880 Control rep3
This SubSeries is part of SuperSeries:
GSE277015 Endothelial-secreted Endocan protein acts as a PDGFR alpha ligand and regulates vascularity, radioresistance, and regional phenotype in glioblastoma
Relations
BioProject PRJNA1160226

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE277011_ProcessedData.xlsx 3.5 Mb (ftp)(http) XLSX
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Raw data are available in SRA

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