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Series GSE27889 Query DataSets for GSE27889
Status Public on Apr 19, 2011
Title Natural genetic variation caused by small insertions and deletions in the human genome
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary We identified 1.96 million small insertions and deletions (INDELs) in the genomes of 79 diverse humans. 10,003 of these INDELs were probed on a custom INDEL genotyping array.
 
Overall design A custom Affymetrix array was developed to genotype 10,003 small human INDEL polymorphisms ranging from 1 bp to 100 bp in length. These arrays were used to genotype the 10,003 INDELs in 158 diverse humans. These humans included: 1) the 24 humans from the polymorphism discovery panel (PDR; Coriell), 2) Yoruban trios from the HapMap project (YRI), 3) Han Chinese from the HapMap project (CHB), and 4) the HuRef genome (Venter). Technical replicates were included for some samples.
 
Contributor(s) Devine SE
Citation(s) 21460062
Submission date Mar 10, 2011
Last update date Mar 23, 2012
Contact name Scott E. Devine
E-mail(s) sdevine@som.umaryland.edu
Phone 410 706-2343
Organization name Institute for Genome Sciences
Lab Devine
Street address 801 W. Baltimore Street
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
 
Platforms (1)
GPL13330 [INDEL01m520678F] Affymetrix human INDEL genotyping array
Samples (170)
GSM697776 NA15029
GSM697777 NA15036
GSM697778 NA15038
Relations
BioProject PRJNA138005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE27889_Genotype_data.xls.gz 1.2 Mb (ftp)(http) XLS
GSE27889_RAW.tar 136.4 Mb (http)(custom) TAR (of CEL)
GSE27889_brlmm-p-plus.normalized-summary.txt.gz 14.6 Mb (ftp)(http) TXT
Processed data are available on Series record

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