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GEO accession:
Series GSE28092
Query DataSets for GSE28092
Status
Public on Jun 30, 2011
Title
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Human1Mv1_C)
Organism
Homo sapiens
Experiment type
Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary
Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.
Overall design
36 Samples
Contributor(s)
Pinto D
,
MacDonald JR
Citation(s)
21552272
Submission date
Mar 22, 2011
Last update date
Jan 17, 2019
Contact name
Stephen W Scherer
E-mail(s)
stephen.scherer@sickkids.ca
Organization name
The Hospital for Sick Children
Department
Genetics and Genomic Biology
Street address
686 Bay Street
City
Toronto
State/province
Ontario
ZIP/Postal code
M5G 0A4
Country
Canada
Platforms (1)
GPL6983
Illumina Human1Mv1 DNA Analysis BeadChip (Human1Mv1_C)
Samples (36)
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GSM694382
NA18576 rep1 at HMS (Human1Mv1_C)
GSM694383
NA18576 rep2 at HMS (Human1Mv1_C)
GSM694384
NA18576 rep3 at HMS (Human1Mv1_C)
GSM694385
NA18980 rep1 at HMS (Human1Mv1_C)
GSM694386
NA18980 rep2 at HMS (Human1Mv1_C)
GSM694387
NA18980 rep3 at HMS (Human1Mv1_C)
GSM694388
NA15510 rep1 at HMS (Human1Mv1_C)
GSM694389
NA15510 rep2 at HMS (Human1Mv1_C)
GSM694390
NA15510 rep3 at HMS (Human1Mv1_C)
GSM694391
NA10851 rep1 at HMS (Human1Mv1_C)
GSM694392
NA10851 rep2 at HMS (Human1Mv1_C)
GSM694393
NA10851 rep3 at HMS (Human1Mv1_C)
GSM694394
NA18517 rep1 at HMS (Human1Mv1_C)
GSM694395
NA18517 rep2 at HMS (Human1Mv1_C)
GSM694396
NA18517 rep3 at HMS (Human1Mv1_C)
GSM694397
NA12239 rep1 at HMS (Human1Mv1_C)
GSM694398
NA12239 rep2 at HMS (Human1Mv1_C)
GSM694399
NA12239 rep3 at HMS (Human1Mv1_C)
GSM694400
NA12239 rep1 at TCAG (Human1Mv1_C)
GSM694401
NA12239 rep2 at TCAG (Human1Mv1_C)
GSM694402
NA12239 rep3 at TCAG (Human1Mv1_C)
GSM694403
NA18576 rep1 at TCAG (Human1Mv1_C)
GSM694404
NA18576 rep2 at TCAG (Human1Mv1_C)
GSM694405
NA18576 rep3 at TCAG (Human1Mv1_C)
GSM694406
NA18980 rep1 at TCAG (Human1Mv1_C)
GSM694407
NA18980 rep2 at TCAG (Human1Mv1_C)
GSM694408
NA18980 rep3 at TCAG (Human1Mv1_C)
GSM694409
NA15510 rep1 at TCAG (Human1Mv1_C)
GSM694410
NA15510 rep2 at TCAG (Human1Mv1_C)
GSM694411
NA15510 rep3 at TCAG (Human1Mv1_C)
GSM694412
NA18517 rep1 at TCAG (Human1Mv1_C)
GSM694413
NA18517 rep2 at TCAG (Human1Mv1_C)
GSM694414
NA18517 rep3 at TCAG (Human1Mv1_C)
GSM694415
NA10851 rep1 at TCAG (Human1Mv1_C)
GSM694416
NA10851 rep2 at TCAG (Human1Mv1_C)
GSM694417
NA10851 rep3 at TCAG (Human1Mv1_C)
This SubSeries is part of SuperSeries:
GSE25893
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Relations
BioProject
PRJNA139749
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE28092_Platfcomp_HMS_ILLMN1Msingle_18samples_processed-format.txt.gz
327.2 Mb
(ftp)
(http)
TXT
GSE28092_Platfcomp_HMS_ILLMN1Msingle_18samples_signal-format.txt.gz
261.5 Mb
(ftp)
(http)
TXT
GSE28092_Platfcomp_TCAG_ILLMN1Msingle_18samples_processed-format.txt.gz
324.5 Mb
(ftp)
(http)
TXT
GSE28092_Platfcomp_TCAG_ILLMN1Msingle_18samples_signal-format.txt.gz
264.2 Mb
(ftp)
(http)
TXT
GSE28092_RAW.tar
112.5 Mb
(http)
(custom)
TAR
Processed data included within Sample table
Processed data are available on Series record
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