GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Series GSE28102

Query DataSets for GSE28102

Status

Public on Jun 30, 2011

Title

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (Illumina_650Y)

Organism

Homo sapiens

Experiment type

Genome variation profiling by SNP array
SNP genotyping by SNP array

Summary

Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.

Overall design

18 Samples

Contributor(s)

Pinto D, MacDonald JR

Citation(s)

21552272

Submission date

Mar 22, 2011

Last update date

Jul 17, 2015

Contact name

Stephen W Scherer

E-mail(s)

stephen.scherer@sickkids.ca

Organization name

The Hospital for Sick Children

Department

Genetics and Genomic Biology

Street address

686 Bay Street

City

Toronto

State/province

Ontario

ZIP/Postal code

M5G 0A4

Country

Canada

Platforms (1)

GPL6987

Illumina HumanHap650Yv3 Genotyping BeadChip (HumanHap650Yv3_A)

Samples (18)

More...

GSM696188	NA18576 rep1 genotyping at TCAG (Illumina_650Y) rev2
GSM696189	NA18576 rep 2 genotyping at TCAG (Illumina_650Y) rev2
GSM696190	NA18576 rep 3 genotyping at TCAG (Illumina_650Y) rev2

This SubSeries is part of SuperSeries:

GSE25893

A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants

Relations

BioProject

PRJNA139685

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE28102_Platfcomp_TCAG_ILLMN650Yv3_18samples_processed-format.txt.gz	180.8 Mb	(ftp)(http)	TXT
GSE28102_Platfcomp_TCAG_ILLMN650Yv3_18samples_signal-format.txt.gz	143.2 Mb	(ftp)(http)	TXT
GSE28102_RAW.tar	70.0 Mb	(http)(custom)	TAR
Processed data included within Sample table
Processed data are available on Series record