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Series GSE28112 Query DataSets for GSE28112
Status Public on Jun 30, 2011
Title A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (1X1M)
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.
 
Overall design 36 Samples
 
Contributor(s) Pinto D, MacDonald JR
Citation(s) 21552272
Submission date Mar 22, 2011
Last update date Dec 06, 2012
Contact name Stephen W Scherer
E-mail(s) stephen.scherer@sickkids.ca
Organization name The Hospital for Sick Children
Department Genetics and Genomic Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Platforms (1)
GPL8736 Agilent-021529 Human CGH Whole Genome Microarray 1x1M (G4447A) (Feature Number version)
Samples (36)
GSM696363 NA10851 rep1 genotyping at TCAG (1X1M)
GSM696364 NA15510 rep1 genotyping at TCAG (1X1M)
GSM696365 NA12239 rep1 genotyping at TCAG (1X1M)
This SubSeries is part of SuperSeries:
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Relations
BioProject PRJNA139829

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28112_RAW.tar 3.5 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table
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