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Series GSE28179 Query DataSets for GSE28179
Status Public on Mar 25, 2011
Title Midgut - CGH Differential Replication
Organism Drosophila melanogaster
Experiment type Genome variation profiling by genome tiling array
Summary modENCODE_submission_3278
This submission comes from a modENCODE project of David MacAlpine. For full list of modENCODE projects, see
Project Goal: We will precisely identify sequence elements that direct DNA replication by using chromatin immunoprecipitation of known replication initiation complexes. These experiments will be conducted in multiple cell types and developmental tissues.
For data usage terms and conditions, please refer to and
Overall design EXPERIMENT TYPE: tiling array analysis. BIOLOGICAL SOURCE: Strain: Oregon-R(official name : Oregon-R-modENCODE genotype : wild type ); Tissue: midgut; Developmental Stage: L3 stage wandering larvae; Genotype: wild type; NUMBER OF REPLICATES: 2; EXPERIMENTAL FACTORS: strain Oregon-R; tissue Mid gut; Developmental Stage L3 stage wandering larvae
Web link
Contributor(s) MacAlpine D, Orr-Weaver T, Norman J, Li S, Prinz J
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 25, 2011
Last update date Apr 12, 2012
Contact name DCC modENCODE
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
Platforms (2)
GPL11023 Agilent_Dm_5.1_1M_tiling
GPL11290 Agilent_Dm_5.1_440K_tiling
Samples (2)
GSM697659 MG_CGH extraction1_array1
GSM697660 MG_CGH extraction2_array2
BioProject PRJNA139531

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28179_Midgut-Combined.bed.gff3.gz 1.7 Kb (ftp)(http) GFF3
GSE28179_Midgut-Combined.bedgraph.gz 17.0 Mb (ftp)(http) BEDGRAPH
GSE28179_RAW.tar 93.6 Mb (http)(custom) TAR (of BEDGRAPH, GFF3, TXT)
Processed data provided as supplementary file
Processed data are available on Series record

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