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Series GSE28187 Query DataSets for GSE28187
Status Public on Jun 30, 2011
Title A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (2X244K)
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Systematic evaluation of eleven array platforms commonly used for CNV detection to address parameters of quality and CNV calling.
 
Overall design 72 Samples
 
Contributor(s) Pinto D, MacDonald JR
Citation(s) 21552272
Submission date Mar 25, 2011
Last update date Mar 23, 2012
Contact name Stephen W Scherer
E-mail(s) stephen.scherer@sickkids.ca
Organization name The Hospital for Sick Children
Department Genetics and Genomic Biology
Street address 686 Bay Street
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A4
Country Canada
 
Platforms (2)
GPL6944 Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018897)
GPL6945 Agilent Technologies Human Genome CNV microarray set G4423B (AMADID 018898)
Samples (72)
GSM697700 NA10851_1 genotyping at TCAG (G4423B 018897)
GSM697701 NA10851_2 genotyping at TCAG (G4423B 018897)
GSM697702 NA10851_3 genotyping at TCAG (G4423B 018897)
This SubSeries is part of SuperSeries:
GSE25893 A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
Relations
BioProject PRJNA139547

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28187_RAW.tar 3.2 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table
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