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Series GSE28287 Query DataSets for GSE28287
Status Public on Apr 01, 2011
Title Plasmodium falciparum CNV-SNP chip optimization
Organism Plasmodium falciparum
Experiment type Genome variation profiling by genome tiling array
Summary Optimize SNP genotyping probes and demonstrate a new P. falciparum microarray platform that includes CGH and resequencing probes on the same chip
Overall design 3D7 common reference; lab samples: HB3, Dd2, SC05, 7C126; field patient samples: M1176, M1069, M1094, M1321, M1064, M1111
Contributor(s) Ferdig MT
Citation(s) 21477297
Submission date Mar 31, 2011
Last update date Sep 30, 2014
Contact name Michael Ferdig
Phone (574)631-9973
Organization name University of Notre Dame
Department Biological Sciences
Lab Ferdig Lab
Street address 280 Galvin Life Science
City Notre Dame
State/province IN
ZIP/Postal code 46556
Country USA
Platforms (1)
GPL13355 NimbleGen Pfalciparum 720K 1.0
Samples (44)
GSM699993 Dd2 vs. 3D7 CGH Hybe 1
GSM699994 Dd2 vs. 3D7 CGH Hybe 2
GSM699995 Dd2 vs. 3D7 CGH Hybe 4
BioProject PRJNA139367

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE28287_RAW.tar 309.2 Mb (http)(custom) TAR (of BASES, PAIR)
Processed data included within Sample table
Processed data not applicable for this record

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