|
| Status |
Public on Sep 01, 2011 |
| Title |
ChimeraScan: A tool for identifying chimeric transcription in sequencing data |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Next Generation Sequencing technologies have enabled de novo gene fusion discovery that could reveal candidates with therapeutic significance in cancer. Here we present an open-source software package, ChimeraScan, for the discovery of chimeric transcription between two independent transcripts.
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| |
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| Overall design |
Three cancer cell lines with known gene fusions
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| |
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| Contributor(s) |
Iyer M, Chinnaiyan AM, Maher C |
| Citation(s) |
21840877 |
| |
| Submission date |
May 05, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Matthew Iyer |
| E-mail(s) |
mkiyer@med.umich.edu
|
| Phone |
7346154503
|
| Organization name |
University of Michigan
|
| Department |
Michigan Center for Translational Pathology
|
| Lab |
Chinnaiyan Lab
|
| Street address |
5316 CCGC 0940 1400 E. Medical Center Drive
|
| City |
Ann Arbor |
| State/province |
MI |
| ZIP/Postal code |
48109-0940 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL9115 |
Illumina Genome Analyzer II (Homo sapiens) |
|
| Samples (3) |
|
| Relations |
| SRA |
SRP006719 |
| BioProject |
PRJNA140329 |
