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Series GSE29381 Query DataSets for GSE29381
Status Public on Aug 29, 2011
Title Chip-chip from Human Pulmonary Fibroblasts with H3K9me2 antibody
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary Histone modification H3K9me2 is associated heterochromatin and gene silencing, but the relationship between DNA methylation and H9K9me2 haven’t been checked in a genome-wide scale. This dataset was generated to compare with genome-wide DNA methylation data.
 
Overall design Genome-wide distribution of H3K9me2 in human fibroblasts was mapped using ChIP-chip.
 
Contributor(s) Wen B, Wu H, Feinberg AP
Citation(s) 21706001
Submission date May 18, 2011
Last update date Mar 23, 2012
Contact name Andrew Feinberg
E-mail(s) afeinberg@jhu.edu
Organization name Johns Hopkins University
Department Center for Epigenetics and Department of Medicine
Street address 855 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21212
Country USA
 
Platforms (4)
GPL13613 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 1 of 4
GPL13614 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 2 of 4
GPL13615 NimbleGen Homo sapiens Custom HG18 Whole Genomne Tiling Array 3 of 4
Samples (4)
GSM726153 HPF H3K9me2, array 1 of 4
GSM726154 HPF H3K9me2, array 2 of 4
GSM726155 HPF H3K9me2, array 3 of 4
Relations
BioProject PRJNA141621

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29381_RAW.tar 204.6 Mb (http)(custom) TAR (of TXT, XYS)
Processed data included within Sample table
Processed data provided as supplementary file

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