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Series GSE29559 Query DataSets for GSE29559
Status Public on May 27, 2011
Title Evidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough (RNA-Seq)
Organism Nitratidesulfovibrio vulgaris str. Hildenborough
Experiment type Expression profiling by high throughput sequencing
Summary 5' RNASeq of mRNA from DvH in defined lactate/sulfate media (LS4D)
 
Overall design One lane of sequence each for two different protocols applied to independently grown cells under similar conditions
Web link http://genomics.lbl.gov/supplemental/DvHtranscripts2011/
 
Contributor(s) Price MN, Deutschbauer AM, Kuehl JV, Arkin AP
Citation(s) 21840973
Submission date May 26, 2011
Last update date May 15, 2019
Contact name Morgan N Price
E-mail(s) morgannprice@yahoo.com
Organization name Lawrence Berkeley Lab
Department Physical Biosciences Division
Lab Arkin group
Street address 1 Cyclotron Road Mailstop 977-152
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Platforms (1)
GPL13656 Illumina Genome Analyzer II (Desulfovibrio vulgaris str. Hildenborough)
Samples (2)
GSM731857 Tobacco Acid Pyrophophatase prep DvH_LS4D_5RNASeq
GSM731858 Terminator 5'-Phosphate-Dependent Exonuclease and RNA 5' Polyphosphatase prep DvH_LS4D_5RNASeq_PPP
This SubSeries is part of SuperSeries:
GSE29560 Evidence-based annotation of genes and transcripts in Desulfovibrio vulgaris Hildenborough
Relations
SRA SRP006901
BioProject PRJNA154015

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29559_RAW.tar 2.3 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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