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| Status |
Public on Oct 01, 2011 |
| Title |
RNA-Seq based transcriptional map of bovine respiratory disease pathogen 'Histophilus somni 2336' |
| Organism |
Histophilus somni |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We used RNA-Seq to experimentally annotate H. somni strain 2336 and construct a single nucleotide resolution transcriptome map. Novel expressed elements were identified, and where appropriate, computational predictions of previously described gene boundaries were corrected.
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| Overall design |
Transcript profiling of a single sample by RNA-Seq
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| Contributor(s) |
Kumar R, Lawrence ML, Watt J, Cooksey A, Burgess SC, Nanduri B |
| Citation(s) |
22276113 |
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| Submission date |
May 26, 2011 |
| Last update date |
Aug 27, 2019 |
| Contact name |
Ranjit Kumar |
| E-mail(s) |
rk228@msstate.edu
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| Phone |
6623257706
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| Organization name |
MSU
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| Department |
Dept of Basic Science
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| Lab |
Mark Lawrence
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| Street address |
240 Wise Center Drive,PO Box 6100
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| City |
starkville |
| State/province |
MS |
| ZIP/Postal code |
39762 |
| Country |
USA |
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| Platforms (1) |
| GPL13659 |
Illumina Genome Analyzer II (Histophilus somni) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA141407 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE29578_RAW.tar |
13.1 Mb |
(http)(custom) |
TAR (of BED) |
| Processed data provided as supplementary file |
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