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Series GSE29719 Query DataSets for GSE29719
Status Public on Jan 26, 2012
Title mRNA-Seq of central cells from the Arabidopsis thaliana female gametophyte
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary This dataset provides the transcriptome of the central cell of the female gametophyte from Arabidopsis thaliana.
Overall design We sequenced two biological replicates. Each replicate started with a pool of 450 central cells collected using laser-assisted microdissection (LAM). Libraries were prepared as described in DOI:10.1038/NMETH.1315. Each library was sequenced on one eight of a slide on the AB SOLiD platform (version 3).

IMPORTANT: In the alignment files (.bam), we named the mitochondrial and the chloroplastidial chromosomes ChrM and ChrC. This is different from the "chloroplast" and "mitochondrium" names in the whole genome fasta file available on TAIR.
Contributor(s) Schmid MW, Schmidt A, Klostermeier UC, Barann M, Rosenstiel P, Grossniklaus U
Citation(s) 22291893
Submission date Jun 03, 2011
Last update date May 15, 2019
Contact name Marc William Schmid
Organization name MWSchmid GmbH
Street address Hauptstrasse 34
City Glarus
ZIP/Postal code 8750
Country Switzerland
Platforms (1)
GPL10088 AB SOLiD System 3.0 (Arabidopsis thaliana)
Samples (2)
GSM737033 AtLerCentralCell_wildtype_1
GSM737034 AtLerCentralCell_wildtype_2
SRA SRP007113
BioProject PRJNA141095

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29719_RAW.tar 2.0 Gb (http)(custom) TAR (of BAM, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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