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| Status |
Public on Jan 26, 2012 |
| Title |
mRNA-Seq of central cells from the Arabidopsis thaliana female gametophyte |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This dataset provides the transcriptome of the central cell of the female gametophyte from Arabidopsis thaliana.
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| Overall design |
We sequenced two biological replicates. Each replicate started with a pool of 450 central cells collected using laser-assisted microdissection (LAM). Libraries were prepared as described in DOI:10.1038/NMETH.1315. Each library was sequenced on one eight of a slide on the AB SOLiD platform (version 3).
IMPORTANT: In the alignment files (.bam), we named the mitochondrial and the chloroplastidial chromosomes ChrM and ChrC. This is different from the "chloroplast" and "mitochondrium" names in the whole genome fasta file available on TAIR.
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| Contributor(s) |
Schmid MW, Schmidt A, Klostermeier UC, Barann M, Rosenstiel P, Grossniklaus U |
| Citation(s) |
22291893 |
| |
| Submission date |
Jun 03, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Marc William Schmid |
| E-mail(s) |
contact@mwschmid.ch
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| Organization name |
MWSchmid GmbH
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| Street address |
Hauptstrasse 34
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| City |
Glarus |
| ZIP/Postal code |
8750 |
| Country |
Switzerland |
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| Platforms (1) |
| GPL10088 |
AB SOLiD System 3.0 (Arabidopsis thaliana) |
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| Samples (2) |
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| Relations |
| SRA |
SRP007113 |
| BioProject |
PRJNA141095 |
