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Series GSE30395 Query DataSets for GSE30395
Status Public on Aug 06, 2011
Title Identification of Arabidopsis Long Intergenic Noncoding RNA regulated by RNA-dependent RNA polymerase 2 (RDR2)
Organism Arabidopsis thaliana
Experiment type Non-coding RNA profiling by array
Summary RNA-dependent RNA polymerase 2 (RDR2) is a crucial regulator of RNA-directed DNA methylation (RdDM). Recentily RDR2 was reported to regulate expression of long intergenic noncoding RNAs. Here we used ATH lincRNA v1 expression arrays to compare lincRNA expression in inflorescence tissues of rdr2-1 and WT. Among the 4,634 lincRNAs detected we found that more than 34% of them were differentially expressed, including 676 lincRNAs that were up-regulated and 890 down-regulated in rdr2-1.
 
Overall design Inflorescences(Col-0) x Inflorescences(rdr2-1), 3 biological replicates.
 
Contributor(s) Liu J, Xu J, Jung C, Bernad L, Wang H, Arenas C, Chua N
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Submission date Jul 05, 2011
Last update date Mar 23, 2012
Contact name Jun Liu
E-mail(s) liujun@caas.cn
Organization name Institute of Crop Science
Department Chinese Academy of Agricultural Sciences
Lab Jun Liu lab
Street address 1230 York Avenue
City No.12 Zhongguancun South Street, Haidian
State/province Beijing
ZIP/Postal code 100081
Country China
 
Platforms (1)
GPL13751 ATH long intergenic non-coding RNA array v1 (Probe version)
Samples (6)
GSM754261 Inflorescence_WT_replicate1
GSM754262 Inflorescence_WT_replicate2
GSM754263 Inflorescence_WT_replicate3
Relations
BioProject PRJNA143397

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30395_RAW.tar 4.4 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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