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Series GSE30545 Query DataSets for GSE30545
Status Public on Mar 01, 2012
Title Genome-wide expression profiling reveals transcriptional reprogramming in Fusarium graminearum by FgV1-DK21 virus infection
Organism Fusarium graminearum
Experiment type Expression profiling by array
Summary Using a 3′-tiling microarray covering the whole F. graminearum genes, we carried out genome-wide expression analyses of F. graminearum infected with FgV-DK21 (Mycovirus) at two different time stages (36 h and 120 h).
Our study is the first report which elucidated the global alternation of the prominent cellular pathways in fungal host by FgV1-DK21 virus infection.
Overall design A total of 12 chips were used for microarray. At 36 h and 120 h, total RNAs were extracted from virus free Fusarium and virus infected Fusarium with three biological replicates.
Contributor(s) Cho W, Yu J, Lee K, Son M, Kim K
Citation(s) 22559730
Submission date Jul 11, 2011
Last update date Jun 18, 2012
Contact name Won Kyong Cho
Phone +82-2-880-4928
Organization name Seoul National University
Department Department of Agricultural Biotechnology and Center for Fungal Pathogenesis
Street address 5103-ho, 200-dong, Daehak-dong, Kwanak-gu
City Seoul
ZIP/Postal code 151-921
Country South Korea
Platforms (1)
GPL13843 Roche Nimblegen G.zeae 135K microarray
Samples (12)
GSM757782 DK21_minus_36h_1
GSM757783 DK21_minus_36h_2
GSM757784 DK21_minus_36h_3
BioProject PRJNA144485

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE30545_RAW.tar 57.9 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table
Processed data provided as supplementary file

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