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Series GSE31094 Query DataSets for GSE31094
Status Public on Aug 02, 2011
Title Overexpression of Cbx4 wild type and of a Cbx4 sumoylation mutant in human epidermal stem cells
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Human epidermal stem cells transit from a slow cycling to an actively proliferating state to contribute to homeostasis. Both stem cell states differ in their cell cycle profiles but must remain guarded from differentiation and senescence. Here we show that Cbx4, a Polycomb Repressive Complex-1 (PRC1)-associated protein, maintains human epidermal stem cells slow-cycling and undifferentiated, while protecting them from senescence. Interestingly, abrogating the polycomb activity of Cbx4 impairs its anti-senescent function without affecting stem cell differentiation, indicating that differentiation and senescence are independent processes in human epidermis. Conversely, Cbx4 inhibits stem cell activation and differentiation through its SUMO ligase activity. Global transcriptome and chromatin occupancy analyses indicate that Cbx4 regulates modulators of epidermal homeostasis and represses factors, such as Ezh2, Dnmt1, and Bmi1, to prevent the activate stem cell state. Our results suggest that distinct Polycomb complexes balance epidermal stem cell dormancy and activation, while continually preventing senescence and differentiation.
 
Overall design Primary human keratinocytes were infected with control vector pBABE, Cbx4 wildtype and a Sumoylation mutant version of Cbx4 (the two Sumo Interaction Motifs were deleted), both fused to a Estrogen Receptor to render their activaty inducible by addition of 4OHT to the media. Cells were cultured for 5 days (after infection and selection) under 4OHT treatment, after which total RNA was collected.
 
Contributor(s) Benitah SA, Luis NM
Citation(s) 21885019
Submission date Aug 01, 2011
Last update date Jun 30, 2017
Contact name Salvador Aznar Benitah
E-mail(s) salvador.aznar-benitah@irbbarcelona.org
Phone +34 934034021
Organization name Institute for Research in Biomedicine (IRB, Barcelona)
Department Oncology
Lab Stem Cells and Cancer
Street address Baldiri Reixac 10
City Barcelona
ZIP/Postal code 08028
Country Spain
 
Platforms (1)
GPL10332 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Feature Number version)
Samples (8)
GSM769912 Ctrl technical replicate 1
GSM769913 Ctrl technical replicate 2
GSM769914 Ctrl technical replicate 3
This SubSeries is part of SuperSeries:
GSE31147 Knockdown and Overexpression of Cbx4 wild type, Cbx4 chromodomain mutant, and Cbx4 sumoylation mutant in human epidermal stem cells
Relations
BioProject PRJNA154069

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31094_RAW.tar 80.3 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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