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Series GSE31168 Query DataSets for GSE31168
Status Public on Feb 10, 2012
Title Genetic Landscape of Copy Number Alterations in Gastric Cancer
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Genome-wide DNA copy number profiling of gastric tumors and matched non-maligant samples. The affymetrix SNP6 array was used to obtain DNA copy number profiles in 193 gastric tumors and 98 matched gastric non-malignant samples.
Overall design Genomic DNA extracted from 193 gastric tumors and 98 matched gastric non-malignant (normal) tissues was hybridized on Affymetrix SNP6 genotyping arrays.
Contributor(s) Deng N, Tan P
Citation(s) 22315472, 25053715, 23684942
Submission date Aug 03, 2011
Last update date Nov 27, 2018
Contact name Niantao Deng
Organization name Duke NUS Graduate Medical School
Street address Center for Computational Biology, level 6, 8 College Road
City Singapore
State/province Singapore
ZIP/Postal code 169857
Country Singapore
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (291)
GSM770038 Gastric primary tumor sample 005KD SNP6
GSM770039 Gastric primary tumor sample 006LTE SNP6
GSM770040 Gastric primary tumor sample 007LKB SNP6
BioProject PRJNA144797

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE31168_RAW.tar 18.2 Gb (http)(custom) TAR (of CEL, CNCHP)
Processed data included within Sample table
Processed data provided as supplementary file

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