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Series GSE33821 Query DataSets for GSE33821
Status Public on Dec 01, 2013
Title A functional map of DNA-associated proteolysis
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We established an assay to localize DNA-associated proteins that are slated for degradation by the ubiquitin-proteasome system. The genome-wide map we describe here ties proteolysis to active enhancer elements and to transcription start sites of specific gene families.
Overall design ChIP-sequencing of ubiquitin and transcription factors was performed in the presence or absence of proteasome inhibition.
Contributor(s) Catic A
Citation(s) 24315104
NIH grant(s)
Grant ID Grant title Affiliation Name
K01 AG036744 Regulation of stem cell fate by protein degradation BAYLOR COLLEGE OF MEDICINE Catic
Submission date Nov 18, 2011
Last update date May 15, 2019
Contact name Andre Catic
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (12)
GSM838021 Ubiq_DMSO_rep1
GSM838022 Ubiq_DMSO_rep2
GSM838023 Ubiq_Lacta_rep1
SRA SRP009613
BioProject PRJNA148047

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Supplementary file Size Download File type/resource
GSE33821_RAW.tar 50.2 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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