|
| Status |
Public on Dec 27, 2012 |
| Title |
Transcriptome sequencing of Prunus mume for different tissues. |
| Organism |
Prunus mume |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We have sequenced a wild Prunus mume and constructed a reference sequence for this genome. In order to improve quality of gene models, RNA samples of five tissues (bud, leaf, root, stem, fruit) were extracted from the Prunus mume. To investigate tissue specific expression using the reference genome assembly and annotated genes, we extracted RNA samples of different tissues and conducted transcriptome sequencing and DEG analysis.
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| |
|
| Overall design |
Five RNA pools were created corresponding to different tissues of the Prunus mume.
|
| |
|
| Contributor(s) |
Zhang Q, Chen W, Sun L |
| Citation(s) |
23271652, 31410318, 36212383 |
| |
| Submission date |
Aug 16, 2012 |
| Last update date |
Oct 27, 2022 |
| Contact name |
Zhijun Zheng |
| E-mail(s) |
zhengzhijun@genomics.org.cn
|
| Organization name |
BGI
|
| Street address |
#11 Building 2/F│Beishan Industrial Zone│Yantian District
|
| City |
Shenzhen |
| ZIP/Postal code |
518083 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL15946 |
Illumina HiSeq 2000 (Prunus mume) |
|
| Samples (5)
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|
| Relations |
| BioProject |
PRJNA172987 |
| SRA |
SRP014885 |
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