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Series GSE40199 Query DataSets for GSE40199
Status Public on Dec 31, 2013
Title Whole Genome sequencing of a normal karyotype AML cell line
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Normal Karyotype acute myeloid leukemia (NK-AML) represents approximately 50% of all cases of AML which patients develop. Most AML cell lines are highly abnormal and therefore not good models for investigating NK-AML biology
a novel AML cell line, CG-SH, was recently estabished and here we characterize the gene expression and mutations present through high-throughput sequencing of RNA and genomic DNA using a HiSeq 2000
Overall design The overall design of the experiment was to characterize, at single base pair resolution, all of the genetic defects present in a novel normal karyotype cell line, CG-SH
Contributor(s) Wilhelm B, Celton M, Gosse G, Forest A
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Submission date Aug 17, 2012
Last update date May 15, 2019
Contact name Brian Wilhelm
Organization name University of Montreal
Street address 2950 Chemin Polytechnique
City Montreal
ZIP/Postal code H1J 3R4
Country Canada
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (2)
GSM988216 CG-SH gDNA
BioProject PRJNA173077
SRA SRP014906

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE40199_RAW.tar 115.2 Mb (http)(custom) TAR (of BCF, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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