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Status |
Public on Jun 20, 2013 |
Title |
Genome-wide analysis of FNR and σ70 in E. coli under aerobic and anaerobic growth conditions. |
Organism |
Escherichia coli str. K-12 substr. MG1655star |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
We found many binding sites for FNR under glucose fermentative anaerobic growth conditions. Also, many binding sites were identified for σ70 under both aerobic and anaerobic growthin conditions. Descirbed in the manuscript "Genome-scale Analysis of E. coli FNR Reveals the Complexity of Bacterial Regulon Structure"
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Overall design |
Examination of occupancy of FNR adn σ70 under aerobic and anaerobic growth in conditions.
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Contributor(s) |
Myers K, Yan H, Ong I, Chung D, Liang K, Tran F, Keles S, Landick R, Kiley P |
Citation(s) |
23818864, 23665773 |
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Submission date |
Sep 27, 2012 |
Last update date |
May 15, 2019 |
Contact name |
Kevin S Myers |
E-mail(s) |
kmyers2@wisc.edu
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Organization name |
University of Wisconsin - Madison
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Department |
Great Lakes Bioenergy Research Center
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Street address |
5127 WEI, 1552 University Ave
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City |
Madison |
State/province |
WI |
ZIP/Postal code |
53726 |
Country |
USA |
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Platforms (1) |
GPL16109 |
Illumina Genome Analyzer IIx (Escherichia coli str. K-12 substr. MG1655star) |
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Samples (9)
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This SubSeries is part of SuperSeries: |
GSE41195 |
Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding |
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Relations |
BioProject |
PRJNA176149 |
SRA |
SRP015911 |