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Series GSE41195 Query DataSets for GSE41195
Status Public on Jun 20, 2013
Title Genome-scale Analysis of E. coli FNR Reveals Complex Features of Transcription Factor Binding
Platform organisms Escherichia coli K-12; Escherichia coli str. K-12 substr. MG1655; Escherichia coli str. K-12 substr. MG1655star
Sample organisms Escherichia coli str. K-12 substr. MG1655; Escherichia coli str. K-12 substr. MG1655star
Experiment type Genome binding/occupancy profiling by genome tiling array
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by array
Expression profiling by high throughput sequencing
Expression profiling by genome tiling array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 23818864
Submission date Sep 27, 2012
Last update date May 15, 2019
Contact name Kevin S Myers
E-mail(s) kmyers2@wisc.edu
Organization name University of Wisconsin - Madison
Department Great Lakes Bioenergy Research Center
Street address 5127 WEI, 1552 University Ave
City Madison
State/province WI
ZIP/Postal code 53726
Country USA
 
Platforms (3)
GPL8708 UW-Madison Escherichia coli K-12 MG1655 tiling array (YD Design)
GPL14649 NimbleGen E. coli K12 Gene Expression Array [071112_Ecoli_K12_EXP]
GPL16109 Illumina Genome Analyzer IIx (Escherichia coli str. K-12 substr. MG1655star)
Samples (48)
GSM1010199 FNR - Anaerobic - A
GSM1010200 FNR - Anaerobic - B
GSM1010201 FNR - Anaerobic - C
This SuperSeries is composed of the following SubSeries:
GSE41186 Chip-chip from Escherichia coli MG1655 K-12, WT and ∆fnr strains
GSE41187 Genome-wide analysis of FNR and σ70 in E. coli under aerobic and anaerobic growth conditions.
GSE41189 Expression analysis of Escherichia coli MG1655 K-12 WT and ∆fnr mutant
Relations
BioProject PRJNA176146

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE41195_RAW.tar 687.7 Mb (http)(custom) TAR (of CALLS, GFF, PAIR, TXT, WIG)
SRA Run SelectorHelp
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