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Series GSE41354 Query DataSets for GSE41354
Status Public on Sep 15, 2013
Title Distribution of insulator proteins CP190, dCTCF, Su(Hw) and Mod(mdg4)2.2 in Drosophila S2 cells in the presence or absence of dPARP inhibitor 3AB
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We mapped the localization of insulator proteins in Drosophila S2 cells in the presence or absence of 12mM of 3AB. We found that inhibition of PARylation affects DNA binding of insulator proteins only at a small subsets of genomic sites.
Overall design Examination of genomic occupancy for insulator proteins in S2 cells with or without 3AB inhibition.
Contributor(s) Corces VG, Ong C-, Van Bortle K-
Citation(s) 24055367
Submission date Oct 04, 2012
Last update date May 15, 2019
Contact name Chin-Tong Ong
Organization name Temasek Life Sciences Lab
Department Developmental Biology
Lab Ong
Street address 1 Research Link
City Singapore
ZIP/Postal code 117604
Country Singapore
Platforms (1)
GPL13304 Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (10)
GSM1015404 Ct_CP190
GSM1015405 3AB_CP190
GSM1015406 Ct_Su(Hw)
This SubSeries is part of SuperSeries:
GSE50769 Mapping the inter- and intra-chromosomal interactions of specific insulator binding sites with circular chromosome conformation capture (4C) assay (Gondor et al., 2008 Nature Protocol)
SRA SRP016002
BioProject PRJNA176855

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Supplementary file Size Download File type/resource
GSE41354_RAW.tar 65.3 Mb (http)(custom) TAR (of BED, GFF)
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Raw data are available in SRA
Processed data provided as supplementary file

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