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| Status |
Public on Dec 31, 2013 |
| Title |
Chromatin immunoprecipitation of MADS29 to find the cis regulatory regions and targets of this transcription factor |
| Organism |
Oryza sativa |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
A ChIP-seq analysis revealed 378 targets of OsMADS29, which include genes involved in cytokinin metabolism and auxin signaling, carbohydrate metabolism, transporters and a large number of transcription factors, reflecting on its functional diversity.
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| Overall design |
Chromatin Immunonoprecipitation of MADS29 using antiMADS29 antibody was done using rice 9 DAP seed tissue with total input chromatin and mock immunoprecipitated chromatin as controls
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| Contributor(s) |
Nayar S, Kapoor S |
| Citation missing |
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| |
| Submission date |
Nov 09, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
Sanjay Kapoor |
| E-mail(s) |
saraswati.nayar@gmail.com
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| Organization name |
University of Delhi, South Campus
|
| Department |
Department of Plant Molecular Biology
|
| Street address |
Benito Huarez MArg
|
| City |
New Delhi |
| ZIP/Postal code |
110021 |
| Country |
India |
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| Platforms (1) |
| GPL9147 |
Illumina Genome Analyzer (Oryza sativa) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA179281 |
| SRA |
SRP017137 |
