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Series GSE431 Query DataSets for GSE431
Status Public on Aug 15, 2003
Title pmr4 vs. wild-type (May, 2003)
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary There were two genotypes:
(1) Columbia-0, wild-type (C)
(2) pmr4-1 mutant (P), callose synthase deficient mutant (Vogel and Somerville (2000) Proc. Natl. Acad. Sci., USA 97: 1897).

There were two treatments:
(1) uninoculated (U)
(2) 3 days after inoculation with the powdery mildew pathogen, Erysiphe cichoracearum, race UCSC (I).

There were four biological replicates, labeled 1, 2, 3 or 4.

Examples of the sample labels are:
CU1 = Columbia-0, uninoculated, replicate 1
CI2 = Columbia-0, 3 days after inoculation with powdery mildew, replicate 2
PU3 = pmr4-1, uninoculated, replicate 3
PI4 = pmr4-1, 3 days after inoculation with powdery mildew, replicate 4.

In total, there were 16 Affymetrix ATH1 GeneChips (2 genotypes x 2 treatments x 4 biological replicates).
Keywords: repeat sample
 
 
Contributor(s) Nishimura MT, Stein M, Hou B, Vogel JP, Edwards HH, Somerville SC
Citation(s) 12920300
Submission date May 12, 2003
Last update date Aug 28, 2018
Contact name Shauna Somerville
E-mail(s) shauna@andrew2.stanford.edu
Phone 650-325-1521
URL http://carnegiedpb.stanford.edu/research/research_ssomerville.php
Organization name Carnegie Institution of Washington
Department Plant Biology
Street address 260 Panama Street
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (16)
GSM6227 CU4
GSM6544 CU3
GSM6571 CU2
Relations
BioProject PRJNA85005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE431_RAW.tar 145.3 Mb (http)(custom) TAR (of CEL, CHP, EXP, RPT)
Processed data provided as supplementary file

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