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| Status |
Public on Feb 04, 2014 |
| Title |
Expression analysis of HFF cells in S phase |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by genome tiling array
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| Summary |
Whole transcriptome expression analysis of HFF cells on Affymetrix Human Tiling 1.0 array set. Cells were synchronised by serum starvation and transcriptome-wide expression in S phase was assessed by using TileShuffle (Otto C, Reiche K, Hackermüller J. "Detection of differentially expressed segments in tiling array data". Bioinformatics. 2012 Jun 1;28(11):1471-9. Epub 2012 Apr 6.).
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| Overall design |
We analyzed one Affymetrix Human Tiling 1.0R set
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| Contributor(s) |
Hackermüller J, Reiche K, Otto C, Hösler N, Brocke-Heidrich K, Böhlig L, Kasack K, Ahnert P, Krupp W, Engeland K, Stalder PF, Horn F |
| Citation(s) |
24594072 |
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| Submission date |
Feb 25, 2013 |
| Last update date |
May 09, 2014 |
| Contact name |
Kristin Reiche |
| E-mail(s) |
kristin.reiche@izi.fraunhofer.de
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| Organization name |
Fraunhofer Institute for Cell Therapy and Immunology
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| Department |
Diagnostics
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| Street address |
Perlickstr. 1
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| City |
Leipzig |
| ZIP/Postal code |
04103 |
| Country |
Germany |
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| Platforms (14)
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| GPL6156 |
[Hs35b_M01R] Affymetrix Human Tiling 1.0R Set, Array 1 |
| GPL6157 |
[Hs35b_M02R] Affymetrix Human Tiling 1.0R Set, Array 2 |
| GPL6158 |
[Hs35b_M03R] Affymetrix Human Tiling 1.0R Set, Array 3 |
| GPL6159 |
[Hs35b_M04R] Affymetrix Human Tiling 1.0R Set, Array 4 |
| GPL6160 |
[Hs35b_M05R] Affymetrix Human Tiling 1.0R Set, Array 5 |
| GPL6161 |
[Hs35b_M06R] Affymetrix Human Tiling 1.0R Set, Array 6 |
| GPL6162 |
[Hs35b_M07R] Affymetrix Human Tiling 1.0R Set, Array 7 |
| GPL6163 |
[Hs35b_M08R] Affymetrix Human Tiling 1.0R Set, Array 8 |
| GPL6164 |
[Hs35b_M09R] Affymetrix Human Tiling 1.0R Set, Array 9 |
| GPL6165 |
[Hs35b_M10R] Affymetrix Human Tiling 1.0R Set, Array 10 |
| GPL6166 |
[Hs35b_M11R] Affymetrix Human Tiling 1.0R Set, Array 11 |
| GPL6167 |
[Hs35b_M12R] Affymetrix Human Tiling 1.0R Set, Array 12 |
| GPL6168 |
[Hs35b_M13R] Affymetrix Human Tiling 1.0R Set, Array 13 |
| GPL6169 |
[Hs35b_M14R] Affymetrix Human Tiling 1.0R Set, Array 14 |
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| Samples (14)
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| GSM1088082 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088083 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088084 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088085 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088086 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088087 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088088 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088089 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088090 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088091 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088092 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088093 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088094 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
| GSM1088095 |
Whole transcriptome analysis of HFF cells using TileShuffle (S phase) |
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| This SubSeries is part of SuperSeries: |
| GSE44632 |
Differential expression analysis of HFF cells in G1 phase compared to cells in S |
| GSE44633 |
Differential expression analysis of HFF cells in S phase compared to cells in G2 |
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| Relations |
| BioProject |
PRJNA190697 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE44629_RAW.tar |
328.8 Mb |
(http)(custom) |
TAR (of BED, CEL) |
| Processed data provided as supplementary file |
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