|
| Status |
Public on Feb 28, 2013 |
| Title |
Global analyses of how 3' UTR-isoform choice influences mRNA stability and translational efficiency |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We obtained global measurements of decay and translation rates for mammalian mRNAs with alternative 3' untranslated regions (3' UTRs).
|
| |
|
| Overall design |
1 3P-Seq sample from 3T3 cells and 1 3P-Seq sample from mouse ES cells; 2 2P-Seq steady state and 4 2P-Seq with actinomycin D; 6 polysome fraction 2P-Seq
|
| |
|
| Contributor(s) |
Spies N, Burge CB, Bartel DP |
| Citation(s) |
24072873 |
| |
| Submission date |
Feb 26, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Noah Spies |
| Organization name |
Stanford University
|
| Department |
Pathology
|
| Lab |
Arend Sidow
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (2) |
| GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA191095 |
| SRA |
SRP018886 |
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