GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE46594 Query DataSets for GSE46594
Status Public on Dec 31, 2016
Title The self-renewal of gastric cancer stem cells is regulated by a specific collaboration between the microenvironment and the genetic condition.
Organism Homo sapiens
Experiment type Genome variation profiling by SNP array
Summary Because cancer stem cells already had genetic and epigenetic alterations which can affect the self-renewal, we tried to characterize genetic and epigenetic changes of the gastric cancer stem cells. To do this, we performed SNP array, MBD sequencing and RNA sequencing.
Overall design copy number alteration profiles of Normal tissue and gastric cancer stem cell were generated by SNP6.0 Array, in three patients(csc1,csc2,csc3).
Contributor(s) Oh S, Kim S, Baek S
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 02, 2013
Last update date Nov 27, 2018
Contact name sujin Baek
Phone +82-10-7494-2876
Organization name KRIBB
Department MGRC
Street address Gwahank-ro 125
City Daejeon
ZIP/Postal code 305-806
Country South Korea
Platforms (1)
GPL6801 [GenomeWideSNP_6] Affymetrix Genome-Wide Human SNP 6.0 Array
Samples (10)
GSM1133000 csc1-dc_snp6.0
GSM1133001 csc1-sc_snp6.0
GSM1133002 csc2-dc_snp6.0
This SubSeries is part of SuperSeries:
GSE46598 Integrated epigenomic analyses of enhancer as well as promoter regions in gastric cancer
BioProject PRJNA201425

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE46594_RAW.tar 638.1 Mb (http)(custom) TAR (of CEL, CNCHP)
GSE46594_gcsc_snp6.seg.txt.gz 1.8 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap