NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE48465 Query DataSets for GSE48465
Status Public on Sep 01, 2013
Title crl; Transcriptome comparison of the crl mutant and CDT1-RNAi line
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary au13-04_cdtbis; cdt1_bis
crl mutants and CDT1-RNAi lines have very similar macroscopic phenotypes as well as identical defects in plastid division and biogenesis. Our goal wwas to determine how much of these similarities originated from similar alterations of gene expression.

Plantlets of crl mutant and CDT1-RNAi lines were grown in vitro on MS1/2 medium for 14 days. CDT1-RNAi lines were compared to the corresponding wild-type (Ws), whereas crl mutants were compared to their wild-type siblings and are in the Col0 ecotype.
 
Overall design 4 dye-swap - normal vs rnai mutant comparaison, normal vs transgenic comparaison
Web link http://urgv.evry.inra.fr/cgi-bin/projects/CATdb/consult_expce.pl?experiment_id=520
 
Contributor(s) Balzergue S, Taconnat L, Raynaud C, Martin-Magniette M
Citation(s) 25037213
Submission date Jul 02, 2013
Last update date Oct 02, 2014
Contact name Soubigou-Taconnat Ludivine
E-mail(s) soubigou@evry.inra.fr
Organization name INRA
Department URGV
Lab ADT
Street address 2 rue gaston crémieux
City evry
ZIP/Postal code 91000
Country France
 
Platforms (1)
GPL17404 INRA-CNRS-UEVE Arabidopsis thaliana 73K [120228_Athal_CATMA62_AA_exp]
Samples (8)
GSM1179356 557183A01 - WS_BR1 vs CDT1-RNAi_BR1
GSM1179357 557183A02 - CDT1-RNAi_BR1 vs WS_BR1
GSM1179358 557183A03 - WS_BR2 vs CDT1-RNAi_BR2
Relations
BioProject PRJNA210593

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48465_RAW.tar 74.2 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap