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Series GSE48487 Query DataSets for GSE48487
Status Public on Jul 02, 2013
Title Characterization and Comparison of the Leukocyte Transcriptomes of Three Cattle Breeds
Organisms Bos taurus; Bos indicus
Experiment type Expression profiling by high throughput sequencing
Summary In this study, we use mRNA-Seq to characterize and compare the leukocyte transcriptomes of Holstein, Jersey, and Cholistani with respect to variations in sequence, expression, and splicing.
 
Overall design Poly A+ RNA are extracted from leukocytes of pools of blood drawn from cows of three different breeds, Holstein, Jersey, and Cholistani. The objective of the study is to compare sequence variation and gene expression of the three cattle breeds.
 
Contributor(s) Khatib H
Citation(s) 22291923
Submission date Jul 02, 2013
Last update date May 15, 2019
Contact name Wen Huang
E-mail(s) whuang.ustc@gmail.com
Phone 5173539136
Organization name Michigan State University
Department Animal Science
Lab Wen Huang
Street address 474 S Shaw Ln, Anthony Hall 1205F
City East Lansing
State/province MI
ZIP/Postal code 48824
Country USA
 
Platforms (2)
GPL15750 Illumina Genome Analyzer IIx (Bos taurus)
GPL17401 Illumina Genome Analyzer IIx (Bos indicus)
Samples (3)
GSM1179804 Holstein
GSM1179805 Jersey
GSM1179806 Cholistani
Relations
BioProject PRJNA210317
SRA SRP026487

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48487_gene.exp.table.txt.gz 575.2 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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