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| Status |
Public on Jul 09, 2013 |
| Title |
Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Here we describe a lariat-sequencing approach, which offers high sensitivity for detecting splicing events, and its application to the unicellular fungus, Schizosaccharomyces pombe, an organism that shares many of the hallmarks of alternative splicing in mammalian systems but for which no previous examples of exon-skipping had been demonstrated. Over 200 previously unannotated splicing events were identified, including examples of regulated alternative splicing.
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| Overall design |
Total RNA from ∆dbr1 S. pombe grown under 41 different conditions, pooled, then run under two-dimensional gel electrophoresis to separate linear from circular RNA. Circular RNA was excised and prepared as a single-end barcoded Illumina sequencing library.
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| Contributor(s) |
Awan AR, Manfredo A |
| Citation(s) |
23861491 |
| |
| Submission date |
Jul 08, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
Jeffrey A Pleiss |
| E-mail(s) |
jpleiss@cornell.edu
|
| Organization name |
Cornell University
|
| Department |
Molecular Biology and Genetics
|
| Street address |
451 Biotech
|
| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
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| Platforms (1) |
| GPL15167 |
Illumina Genome Analyzer IIx (Schizosaccharomyces pombe) |
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| Samples (2) |
| GSM1181875 |
pooled total RNA subjected to "short" running conditions for two dimensional gel electrophoresis |
| GSM1181876 |
pooled total RNA subjected to "long" running conditions for two dimensional gel electrophoresis |
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| Relations |
| BioProject |
PRJNA210769 |
| SRA |
SRP026617 |
