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Series GSE48948 Query DataSets for GSE48948
Status Public on Dec 31, 2019
Title Global transcriptome analysis identifies genes regulated by FDP
Organism Arabidopsis thaliana
Experiment type Expression profiling by genome tiling array
Summary Flowering of Arabidopsis is induced at the shoot meristem by environmental and endogenous signals. FLOWERING LOCUS T (FT) protein is a systemic signal that induces rapid flowering in response to long summer days (LDs) whereas gibberellin (GA) growth regulators trigger flowering by default in short days (SDs). Mutations in the bZIP transcription factor FDP, which physically interacts to FT, cause late flowering and dwarfism. In order to study the genetic pathways affected by FDP, we compared the global transcriptome changes of Col-0 plants carrying a fusion of the strong ubiquitously expressed CaMV35S promoter to an FDP DsRNAi construct (35S::FDP dsRNA).
 
Overall design Col-0 wt and 35s::FDP dsRNA plants were grown under LD conditions during 9 days. Aerial parts of each genotypes were harvested at the end of the light period (ZT16). Biological triplicates of each genotype were used for the Tiling Array experiments.
 
Contributor(s) Romera-Branchat M, Jang S, Porri A, Andrés F, Madrigal P, García-Martínez JL, Nougalli I, Coupland G
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Submission date Jul 17, 2013
Last update date Jan 01, 2020
Contact name Fernando Andres
E-mail(s) andres@mpipz.mpg.de
Organization name Max Planck Institute for Plant Breeding Research
Department Plant Developmental Biology
Lab Prof George Coupland
Street address Carl von Linne 10
City Cologne
ZIP/Postal code 50829
Country Germany
 
Platforms (1)
GPL10977 [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array
Samples (6)
GSM1187299 wt replicate 4
GSM1187300 wt replicate 5
GSM1187301 wt replicate 6
Relations
BioProject PRJNA212383

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE48948_RAW.tar 252.5 Mb (http)(custom) TAR (of CEL)
GSE48948_log2_RMA.txt.gz 1.4 Mb (ftp)(http) TXT
Processed data are available on Series record

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