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Series GSE49044 Query DataSets for GSE49044
Status Public on Aug 27, 2013
Title DNA unmethylome profiling by covalent capture of CpG sites (microarray)
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Here we present an approach for the mapping of unmethylated DNA. Our technique is based on DNA methyltransferase-directed transfer of activated groups (mTAG) and covalent biotin tagging of unmodified CpG sites followed by affinity enrichment and interogation on tiling microarrays or next generation sequencing.
Overall design mapping of unmethylated DNA
Contributor(s) Kriukienė E, Labrie V, Khare T, Urbanavičiūtė G, Lapinaitė A, Koncevičius K, Li D, Wang T, Pai S, Ptak C, Gordevičius J, Wang S, Petronis A, Klimašauskas S
Citation(s) 23877302
Submission date Jul 19, 2013
Last update date Mar 21, 2017
Contact name Viviane Labrie
Organization name Centre for Addiction and Mental Health
Lab The Krembil Family Epigenetics Laboratory
Street address 250 College st.
City Toronto
State/province Ontario
ZIP/Postal code M5T 1R8
Country Canada
Platforms (3)
GPL4910 [Hs35b_P01R] Affymetrix Human Tiling 2.0R Set, Array 1
GPL4913 [Hs35b_P04R] Affymetrix Human Tiling 2.0R Set, Array 4
GPL4916 [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7
Samples (90)
GSM1192872 MeDIP_brain_1018B
GSM1192873 MeDIP_brain_1018C
GSM1192874 MeDIP_brain_1030A
BioProject PRJNA212776

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE49044_RAW.tar 6.5 Gb (http)(custom) TAR (of BED, BEDGRAPH, CEL)
Processed data provided as supplementary file

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