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| Status |
Public on Aug 10, 2013 |
| Title |
seq-AB3594_H3K79me2:346021_N2_L3 |
| Project |
modENCODE
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| Organism |
Caenorhabditis elegans |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
modENCODE_submission_5047
This submission comes from a modENCODE project of Jason Lieb. For full list of modENCODE projects, see http://www.genome.gov/26524648
Project Goal: The focus of our analysis will be elements that specify nucleosome positioning and occupancy, control domains of gene expression, induce repression of the X chromosome, guide mitotic segregation and genome duplication, govern homolog pairing and recombination during meiosis, and organize chromosome positioning within the nucleus. Our 126 strategically selected targets include key histone modifications and histone variants. We will integrate information generated with existing knowledge on the biology of the targets and perform ChIP-seq analysis on mutant and RNAi extracts lacking selected target proteins.
For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
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| Overall design |
EXPERIMENT TYPE: CHIP-seq. BIOLOGICAL SOURCE: Strain: N2; Developmental Stage: L3 Larva; Genotype: wild type; Sex: mixed Male and Hermaphrodite population; EXPERIMENTAL FACTORS: Developmental Stage L3 Larva; temp (temperature) 20 degree celsius; Strain N2; Antibody AB3594 H3K79me2:346021 (target is H3K79me2)
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| Web link |
http://www.modencode.org
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| |
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| Contributor(s) |
Ahringer J, Latorre I, Canonge A |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| BioProject |
PRJNA63455 |
| |
| Submission date |
Aug 10, 2013 |
| Last update date |
May 15, 2019 |
| Contact name |
DCC modENCODE |
| E-mail(s) |
help@modencode.org
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| Phone |
416-673-8579
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| Organization name |
Ontario Institute for Cancer Research
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| Lab |
modENCODE DCC
|
| Street address |
MaRS Centre, South Tower, 101 College Street, Suite 800
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| City |
Toronto |
| State/province |
Ontario |
| ZIP/Postal code |
M5G 0A3 |
| Country |
Canada |
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| Platforms (1) |
| GPL9309 |
Illumina Genome Analyzer (Caenorhabditis elegans) |
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| Samples (4)
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| GSM1206316 |
seq-AB3594_H3K79me2:346021_N2_L3_Input_Rep1 |
| GSM1206317 |
seq-AB3594_H3K79me2:346021_N2_L3_Input_Rep2 |
| GSM1206318 |
seq-AB3594_H3K79me2:346021_N2_L3_ChIP_Rep1 |
| GSM1206319 |
seq-AB3594_H3K79me2:346021_N2_L3_ChIP_Rep2 |
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