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Series GSE50205 Query DataSets for GSE50205
Status Public on Aug 28, 2013
Title Identification of the transcriptional profile of the hyphal tip of Neurospora crassa
Organism Neurospora crassa
Experiment type Expression profiling by high throughput sequencing
Summary A colony of fungus is comprised of long, branching filamentous cells called hyphae. Genetic mechanisms underlying the development of hyphae are poorly understood. We sectioned hyphae of a model fungus, Neurospora crassa (pink bread mold), into six parts depending on the age of the cells; 1 hour, 3 hour, 9 hour, 15 hour, 21 hour and 27 hour old, respectively. This data submission reflects an RNAseq analysis of mRNA extracted from the 1 hour time-point.
 
Overall design 1 mycelial mRNA profile of 1 hour growth (hyphal tip) from Neurospora crassa strain FGSC 2489, Data was generated using Illumina GAIIx.
 
Contributor(s) Hall CR, Kasuga T
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Submission date Aug 26, 2013
Last update date May 15, 2019
Contact name Charles Robert Hall
E-mail(s) neurosporacrassa@gmail.com
Phone 510-643-2546
Organization name UC Berkeley
Department Plant and Microbial Biology
Lab N. Louise Glass
Street address 341 Koshland Hall
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Platforms (1)
GPL15629 Illumina Genome Analyzer II (Neurospora crassa)
Samples (1)
GSM1215620 Wild Louisiana N. crassa isolate 2489 Tip
Relations
BioProject PRJNA217319
SRA SRP029255

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE50205_RAW.tar 100.0 Kb (http)(custom) TAR (of RPKM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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